It has been 500 days since the first known US death from Covid-19. Variants and low vaccination rates threaten to prolong the pandemic – CNN

New York and California, which were home to some of the nation's deadliest virus hotspots last year, are fully reopening in time for the summer as Sunday marks the 500th day since the first known Covid-19 death in the US.

But there's still a long way to go, CNN medical analyst Dr. Leana Wen warned Saturday evening.

"We certainly have to acknowledge that we have come a long way, and we're out of the worst of it. We're not going to see the massive surges that we saw over the holidays," said Wen, who is the former health commissioner for Baltimore.

"The problem, though, is that we should really be looking at the numbers for each community instead of looking at the US as a whole because while the US as a whole is doing so much better, and there are pockets of the country that have very high vaccination rates, we also have pockets of the country that are actually undergoing massive surges right now where their hospitals are getting full again," Wen said.

While health experts agree full vaccination offers protection against some variants of Covid-19, Wen added that it's unknown whether a variant resistant to vaccines will emerge.

"We just don't know. If it's anything that we've learned during Covid-19, it's how much we need to be humble in the face of this virus," she said.

She noted that it's "certain" new variants will develop, which could make vaccines slightly ineffective, but not entirely.

"This is another reason why those who are unvaccinated should be vaccinated as soon as possible," Wen said.

Vaccination lags continue in some states

As of Sunday, 45.1% of the total US population was fully vaccinated against Covid-19, while 53.3% had received at least one dose.

Nationally, 65.4% of adults have received at least one dose, with the current pace of vaccinations at 1.2 million doses per day, according to CDC data Sunday.

Jackson, Mississippi, Mayor Chokwe Antar Lumumba told CNN on Saturday the state is so far behind in vaccinations in part because of "a dynamic of so many individuals who do not have primary health care physicians on a day-to-day basis, and this is another example of how this pandemic is highlighting the disparities in health care."

In Hinds County, where Jackson is located, 40% of the total population is at least partially vaccinated while 36% is fully inoculated, according to state data.

"If we see people who do not have primary health care physicians and we're asking them to get vaccinated, we're asking them to deviate from the norms that they have in every other fashion of their lives," Lumumba added. "People who have not been to the doctor in many years, and in some instances never, and now we're trying to encourage them to ... go get a shot in their arm."

Lumumba noted one way to encourage vaccination is "meeting people where they are," whether that's in barbershops or churches. He noted that vaccine accessibility and historical mistrust within Black and brown communities are contributing factors to the low vaccination rate in his city, whose population is about 85% Black.

Variants on the rise

Alabama, Louisiana, Arkansas, Tennessee and Wyoming join Mississippi in being among the states with the lowest vaccination rates. That's a problem because experts have been warning that emerging variants could cause serious illness for the unvaccinated.

The CDC has predicted the Delta variant, which was first identified in India, could become the dominant strain in the US.

The Delta variant, along with the Gamma or P.1 variant, have been deemed variants of concern by the CDC -- meaning their danger comes from their ability to transmit more easily or cause more severe disease.

The Gamma variant, first identified in Brazil, has been detected in every US state where the CDC has variant information.

Vaccination has been shown as the best way for the US to get ahead of the variants. A recent study by Public Health England found that two doses of a coronavirus vaccine are "highly effective against hospitalization" caused by the Delta variant. The study found the Pfizer/BioNTech vaccine is 96% effective against hospitalization after two doses.

Surgeon General Vivek Murthy previously told CNN there isn't enough data to indicate the effectiveness of Johnson & Johnson's one-dose vaccine in regard to the Delta variant, but it has shown it can help prevent hospitalizations and deaths when people are infected with other strains.

"The key is get vaccinated, get both doses," Murthy said.

Steve Edwards, the CEO of CoxHealth, a system of hospitals and clinics based in Missouri, told CNN on Friday that the Delta variant is unlike others.

"We can't tell why one patient is doing poorly and one is doing well. There's just something different about how this variant is affecting the immune system of our patients," Edwards said.

He added along with low vaccination rates in Missouri, the Delta variant is playing a big role in the surge of cases at his hospitals.

"I think the Delta variant is what's fueling this," he said. "Much of the South, Midwest, much of the places that have low vaccination rates -- if confronted with the Delta variant, will see a similar kind of surge of patients as we're beginning to see right now."

Study suggests Delta variant growing faster where vaccinations lower

A new study appears to confirm that the Delta variant is growing faster in US counties with lower vaccination rates.

The Delta variant and and the Gamma variant are overtaking the Alpha -- or B.1.1.7 variant first identified in the United Kingdom -- as the dominant variant in the United States, according to the study by scientists at Helix.

Researchers analyzed nearly 20,000 Covid-19 tests collected since April 2021 and just under 250,000 Covid-19 sequence results of samples Helix collected since January 2021.

"In the United States, this analysis showed that the growth rate of B.1.617.2 was faster than P.1," said the research. However, growth rates of the two variants differed by the county vaccination rate.

The samples the study looked at came from 747 counties. The sequence data from the counties was compared to county vaccination rates that came from the US Centers for Disease Control and Prevention.

They defined a county with a lower vaccination rate as one which had less than 28.5% of the population completely vaccinated on May 1, the others were considered counties with a higher vaccination rate.

"The growth curve for B.1.617.2, which is more transmissible but against which vaccines are highly effective, shows faster growth in counties with lower vaccination rates," said the study. "In contrast, P.1, which is less transmissible but against which vaccines have somewhat less efficacy, has a higher prevalence in counties with higher vaccination rates."

The study is scheduled to be published as a preprint in the coming days.

CNN's Virginia Langmaid, Susannah Cullinane and Naomi Thomas contributed to this report.

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It has been 500 days since the first known US death from Covid-19. Variants and low vaccination rates threaten to prolong the pandemic - CNN